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COVID-19 simulation models are mathematical infectious disease models for the spread of COVID-19. [1] The list should not be confused with COVID-19 apps used mainly for digital contact tracing . Note that some of the applications listed are website-only models or simulators, and some of those rely on (or use) real-time data from other sources.
Infectious disease dynamics. Mathematical models need to integrate the increasing volume of data being generated on host - pathogen interactions. Many theoretical studies of the population dynamics, structure and evolution of infectious diseases of plants and animals, including humans, are concerned with this problem.
SWISS-MODEL is a structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. [1] [2] Homology modeling is currently the most accurate method to generate reliable three-dimensional protein structure models and is routinely used in many practical applications. Homology (or comparative) modelling methods make use ...
About. The GAMA Platform is agent-based modeling software that was originally (2007-2010) developed by the Vietnamese-French research team MSI (located at IFI, Hanoi, and part of the IRD - SU International Research Unit UMMISCO). It is now developed by an international consortium of academic and industrial partners led by UMMISCO Archived 2022 ...
Comparison of software for molecular mechanics modeling. This is a list of computer programs that are predominantly used for molecular mechanics calculations. GPU – GPU accelerated. I – Has interface. Imp – Implicit water. MC – Monte Carlo. MD – Molecular dynamics. Min – Optimization. QM – Quantum mechanics.
Visual Molecular Dynamics ( VMD) is a molecular modelling and visualization computer program. [2] VMD is developed mainly as a tool to view and analyze the results of molecular dynamics simulations. It also includes tools for working with volumetric data, sequence data, and arbitrary graphics objects. Molecular scenes can be exported to ...
sourcecode. [19] PknotsRG. A dynamic programming algorithm for the prediction of a restricted class (H-type) of RNA pseudoknots. Yes. sourcecode, webserver. [20] RNA123. Secondary structure prediction via thermodynamic-based folding algorithms and novel structure-based sequence alignment specific for RNA.
iBioSim [5] [6] is a computer-aided design (CAD) tool for the modeling, analysis, and design of genetic circuits. GUI/Scripting tool [7] for building and simulating multicellular models. Yes, but only for reactions. GUI tool [8] [9] for analyzing and simulating SBML models.