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R (programming language) R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics, and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data.
RStudio. RStudio IDE (or RStudio) is an integrated development environment for R, a programming language for statistical computing and graphics. It is available in two formats: RStudio Desktop is a regular desktop application while RStudio Server runs on a remote server and allows accessing RStudio using a web browser.
Differential gene expression is run with three optional packages (NBPSeq, edgeR and DESeq) using negative binomial distribution methods. Results are stored in a MySQL database to make possible additional analyses. GenePattern is a freely available online platform that provides access to RNA-Seq analysis methods without the need for programming.
Knitr. knitr is a software engine for dynamic report generation with R. [1][2] It is a package in the programming language R that enables integration of R code into LaTeX, LyX, HTML, Markdown, AsciiDoc, and reStructuredText documents. The purpose of knitr is to allow reproducible research in R through the means of literate programming.
The act of writing a script is called scripting. Scripting language or script language describes a programming language that is used for scripting. [1] Originally, scripting was limited to automating an operating system shell and languages were relatively simple. Today, scripting is more pervasive and some languages include modern features that ...
Server-side scripting is a technique used in web development which involves employing scripts on a web server which produces a response customized for each user's (client's) request to the website. Scripts can be written in any of a number of server-side scripting languages that are available. Server-side scripting is distinguished from client ...
A read–eval–print loop (REPL), also termed an interactive toplevel or language shell, is a simple interactive computer programming environment that takes single user inputs, executes them, and returns the result to the user; a program written in a REPL environment is executed piecewise. [1] The term usually refers to programming interfaces ...
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