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2. Nextstrain - Wikipedia

   en.wikipedia.org/wiki/Nextstrain

   Its aim is to support public health measures and surveillance by facilitating understanding of the spread and evolution of pathogens. The Nextstrain platform was begun in 2015. [2] Code developed by Nextstrain is made publicly available, via, for example github.com and its data is available and viewable in accessible form via the pages at the ...

3. Phylogenetic Assignment of Named Global Outbreak Lineages

   en.wikipedia.org/wiki/Phylogenetic_Assignment_of...

   The Phylogenetic Assignment of Named Global Outbreak Lineages ( PANGOLIN) is a software tool developed by Dr. Áine O'Toole [2] and members of the Andrew Rambaut laboratory, with an associated web application developed by the Centre for Genomic Pathogen Surveillance in South Cambridgeshire. [3] Its purpose is to implement a dynamic nomenclature ...

4. Mathematical modelling of infectious diseases - Wikipedia

   en.wikipedia.org/wiki/Mathematical_modelling_of...

   Infectious disease dynamics. Mathematical models need to integrate the increasing volume of data being generated on host - pathogen interactions. Many theoretical studies of the population dynamics, structure and evolution of infectious diseases of plants and animals, including humans, are concerned with this problem.

5. List of protein structure prediction software - Wikipedia

   en.wikipedia.org/wiki/List_of_protein_structure...

   Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.

6. List of systems biology modeling software - Wikipedia

   en.wikipedia.org/wiki/List_of_systems_biology...

   iBioSim [5] [6] is a computer-aided design (CAD) tool for the modeling, analysis, and design of genetic circuits. GUI/Scripting tool [7] for building and simulating multicellular models. Yes, but only for reactions. GUI tool [8] [9] for analyzing and simulating SBML models.

7. Template modeling score - Wikipedia

   en.wikipedia.org/wiki/Template_modeling_score

   Template modeling score. In bioinformatics, the template modeling score or TM-score is a measure of similarity between two protein structures. The TM-score is intended as a more accurate measure of the global similarity of full-length protein structures than the often used RMSD measure. The TM-score indicates the similarity between two ...