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Mathematical models can project how infectious diseases progress to show the likely outcome of an epidemic (including in plants) and help inform public health and plant health interventions. Models use basic assumptions or collected statistics along with mathematics to find parameters for various infectious diseases and use those parameters to calculate the effects of different interventions ...
AMRFinderPlus is used by NCBI's Pathogen Detection Project, which clusters and finds similar pathogen genomic sequences from food, environmental sources, and patients. AMRFinderPlus is run for each bacterial isolate in the Pathogen Detection Project, and the findings are provided for public use. Since its scientific publication in 2021, it has also gathered citations from other users.
Forecasting systems are based on assumptions about the pathogen's interactions with the host and environment, the disease triangle. [1] The objective is to accurately predict when the three factors – host, environment, and pathogen – all interact in such a fashion that disease can occur and cause economic losses.
Comparison of software for molecular mechanics modeling. This is a list of computer programs that are predominantly used for molecular mechanics calculations. Biomolecular simulations, protein folding. Commercial version with multiple graphical front ends is sold by BIOVIA (as CHARMm), formerly Accelrys. Chemical reaction kinetics.
The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML, a standard used for representing physiological processes. The advantage of using standard formats is that even though a particular software application may eventually become unsupported and even ...
This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction.
Compartmental models in epidemiology. Compartmental models are a very general modelling technique. They are often applied to the mathematical modelling of infectious diseases. The population is assigned to compartments with labels – for example, S, I, or R, ( S usceptible, I nfectious, or R ecovered). People may progress between compartments.
The sub-list contains simulators that are based on theoretical models. Due to the high number of pre-print research created and driving by the COVID-19 pandemic, [2] especially newer models should only be considered with further scientific rigor. [3] [4]